Phytopythium: molecular phylogeny and systematics.
Identifieur interne : 000D95 ( Main/Exploration ); précédent : 000D94; suivant : 000D96Phytopythium: molecular phylogeny and systematics.
Auteurs : A W A M. De Cock [Pays-Bas] ; A M Lodhi [Pakistan] ; T L Rintoul [Canada] ; K. Bala [Canada] ; G P Robideau [Canada] ; Z Gloria Abad [États-Unis] ; M D Coffey [États-Unis] ; S. Shahzad [Pakistan] ; C A Lévesque [Canada]Source :
- Persoonia [ 0031-5850 ] ; 2015.
Abstract
The genus Phytopythium (Peronosporales) has been described, but a complete circumscription has not yet been presented. In the present paper we provide molecular-based evidence that members of Pythium clade K as described by Lévesque & de Cock (2004) belong to Phytopythium. Maximum likelihood and Bayesian phylogenetic analysis of the nuclear ribosomal DNA (LSU and SSU) and mitochondrial DNA cytochrome oxidase subunit 1 (COI) as well as statistical analyses of pairwise distances strongly support the status of Phytopythium as a separate phylogenetic entity. Phytopythium is morphologically intermediate between the genera Phytophthora and Pythium. It is unique in having papillate, internally proliferating sporangia and cylindrical or lobate antheridia. The formal transfer of clade K species to Phytopythium and a comparison with morphologically similar species of the genera Pythium and Phytophthora is presented. A new species is described, Phytopythium mirpurense.
DOI: 10.3767/003158515X685382
PubMed: 26240443
PubMed Central: PMC4510269
Affiliations:
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De Cock</name><affiliation wicri:level="1"><nlm:affiliation>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands.</nlm:affiliation><country xml:lang="fr">Pays-Bas</country><wicri:regionArea>CBS-KNAW Fungal Biodiversity Centre, P.O. 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Shahzad</name><affiliation wicri:level="1"><nlm:affiliation>Department of Agriculture, University of Karachi, Karachi, Pakistan.</nlm:affiliation><country xml:lang="fr">Pakistan</country><wicri:regionArea>Department of Agriculture, University of Karachi, Karachi</wicri:regionArea><wicri:noRegion>Karachi</wicri:noRegion></affiliation></author><author><name sortKey="Levesque, C A" sort="Levesque, C A" uniqKey="Levesque C" first="C A" last="Lévesque">C A Lévesque</name><affiliation wicri:level="1"><nlm:affiliation>Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON K1A 0C6, Canada;</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON K1A 0C6</wicri:regionArea><wicri:noRegion>ON K1A 0C6</wicri:noRegion></affiliation></author></analytic><series><title level="j">Persoonia</title><idno type="ISSN">0031-5850</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The genus Phytopythium (Peronosporales) has been described, but a complete circumscription has not yet been presented. In the present paper we provide molecular-based evidence that members of Pythium clade K as described by Lévesque & de Cock (2004) belong to Phytopythium. Maximum likelihood and Bayesian phylogenetic analysis of the nuclear ribosomal DNA (LSU and SSU) and mitochondrial DNA cytochrome oxidase subunit 1 (COI) as well as statistical analyses of pairwise distances strongly support the status of Phytopythium as a separate phylogenetic entity. Phytopythium is morphologically intermediate between the genera Phytophthora and Pythium. It is unique in having papillate, internally proliferating sporangia and cylindrical or lobate antheridia. The formal transfer of clade K species to Phytopythium and a comparison with morphologically similar species of the genera Pythium and Phytophthora is presented. A new species is described, Phytopythium mirpurense. </div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">26240443</PMID><DateCompleted><Year>2015</Year><Month>08</Month><Day>05</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>29</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">0031-5850</ISSN><JournalIssue CitedMedium="Print"><Volume>34</Volume><PubDate><Year>2015</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Persoonia</Title><ISOAbbreviation>Persoonia</ISOAbbreviation></Journal><ArticleTitle>Phytopythium: molecular phylogeny and systematics.</ArticleTitle><Pagination><MedlinePgn>25-39</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3767/003158515X685382</ELocationID><Abstract><AbstractText>The genus Phytopythium (Peronosporales) has been described, but a complete circumscription has not yet been presented. In the present paper we provide molecular-based evidence that members of Pythium clade K as described by Lévesque & de Cock (2004) belong to Phytopythium. Maximum likelihood and Bayesian phylogenetic analysis of the nuclear ribosomal DNA (LSU and SSU) and mitochondrial DNA cytochrome oxidase subunit 1 (COI) as well as statistical analyses of pairwise distances strongly support the status of Phytopythium as a separate phylogenetic entity. Phytopythium is morphologically intermediate between the genera Phytophthora and Pythium. It is unique in having papillate, internally proliferating sporangia and cylindrical or lobate antheridia. The formal transfer of clade K species to Phytopythium and a comparison with morphologically similar species of the genera Pythium and Phytophthora is presented. A new species is described, Phytopythium mirpurense. </AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>de Cock</LastName><ForeName>A W A M</ForeName><Initials>AW</Initials><AffiliationInfo><Affiliation>CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lodhi</LastName><ForeName>A M</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Sindh Agriculture University, Tandojam, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rintoul</LastName><ForeName>T L</ForeName><Initials>TL</Initials><AffiliationInfo><Affiliation>Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON K1A 0C6, Canada;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bala</LastName><ForeName>K</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON K1A 0C6, Canada;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Robideau</LastName><ForeName>G P</ForeName><Initials>GP</Initials><AffiliationInfo><Affiliation>Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON K1A 0C6, Canada;</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Abad</LastName><ForeName>Z Gloria</ForeName><Initials>ZG</Initials><AffiliationInfo><Affiliation>USDA-APHIS-PPQ-Center of Plant Health Science and Technology, Bldg 580, BARC-e, Powder Mill Road, Beltsville, MD 20705, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Coffey</LastName><ForeName>M D</ForeName><Initials>MD</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology and Microbiology, University of California, Riverside, CA 92521, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shahzad</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Agriculture, University of Karachi, Karachi, Pakistan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lévesque</LastName><ForeName>C A</ForeName><Initials>CA</Initials><AffiliationInfo><Affiliation>Agriculture and Agri-Food Canada, 960 Carling Ave, Ottawa, ON K1A 0C6, Canada;</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2014</Year><Month>10</Month><Day>30</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Persoonia</MedlineTA><NlmUniqueID>19540520R</NlmUniqueID><ISSNLinking>0031-5850</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">COI</Keyword><Keyword MajorTopicYN="N">LSU</Keyword><Keyword MajorTopicYN="N">Oomycetes</Keyword><Keyword MajorTopicYN="N">Oomycota</Keyword><Keyword MajorTopicYN="N">Peronosporales</Keyword><Keyword MajorTopicYN="N">Phytopythium</Keyword><Keyword MajorTopicYN="N">Pythiales</Keyword><Keyword MajorTopicYN="N">SSU</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>01</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2014</Year><Month>09</Month><Day>27</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>8</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>8</Month><Day>5</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>8</Month><Day>5</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26240443</ArticleId><ArticleId IdType="doi">10.3767/003158515X685382</ArticleId><ArticleId IdType="pmc">PMC4510269</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mycologia. 2006 May-Jun;98(3):410-22</Citation><ArticleIdList><ArticleId 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